EE219 Project 1 -Classification Analysis on Textual Data Solved

Statistical classification refers to the task of identifying a category, from a predefined set, to which a
data point belongs, given a training data set with known category memberships. Classification differs
from the task of clustering, which concerns grouping data points with no predefined category
memberships, where the objective is to seek inherent structures in data with respect to suitable
measures. Classification turns out as an essential element of data analysis, especially when dealing with
a large amount of data. In this project, we look into different methods for classifying textual data.
Dataset and Problem Statement:
In this project, we work with “20 Newsgroups” dataset. It is a collection of approximately 20,000
newsgroup documents, partitioned (nearly) evenly across 20 different newsgroups, each corresponding
to a different topic.
We highly recommend using python as your programming language. The easiest way to load the data is
to use the built-in dataset loader for 20 newsgroups from scikit-learn package. As an example, if you
want to load only “comp.graphics” category, then you can use the following command:
For the purposes of this project we will be working with only 8 of the classes as shown in Table 1. Load
the training and testing data for the following 8 subclasses of two major classes ‘Computer Technology’
and ‘Recreational activity’.
Table 1. Subclasses of ‘Computer technology’ and ‘Recreational activity’
Computer technology Recreational activity
comp.graphics
comp.os.ms-windows.misc
comp.sys.ibm.pc.hardware
comp.sys.mac.hardware
rec.autos
rec.motorcycles
rec.sport.baseball
rec.sport.hockey
a)     In     a     classification     problem     one     should    make     sure    to     properly     handle     any     imbalance in     the     relative    
sizes     of     the     data     sets     corresponding     to     different     classes.    To     do     so,     one     can    either    modify     the     penalty    
function     (i.e.     assign     more     weight     to     errors from     minority     classes),     or     alternatively,     down-sample     the    
majority    classes,    to    have    the    same    number    of    instances    as    minority    classes.    To    get    started,    perform    the    
following    to    the    data    of    the    8    classes    above:    plot    a    histogram of    the    number    of    training    documents    per    
class    to    check    if    they    are    evenly    distributed.    Note that    the    data    set    is    already    balanced    and    so    in    this    case    
we    do    not    need    to    balance.    But    in    general,    as    a    data    scientist    you    need    to    be    aware    of    this    issue.    
Modeling Text Data and Feature Extraction:
The primary step in classifying a corpus of text is choosing a proper document representation. This
representation should not include too much irrelevant information, which may lead to computational
intractability and over fitting. One common representation of documents is called “Bag of Words”,
where a document is represented as a histogram of term frequencies, or other statistics of the terms,
within a fixed vocabulary. As such, a corpus of text can be summarized into a term-document matrix
whose entries are some statistic of the terms.
First a common sense filtering is done to drop certain words or terms: To avoid unnecessarily large
feature vectors (vocabulary size), terms that are too frequent in almost every document, or are very
rare, are dropped out of the vocabulary. The same goes with special characters, common stop words (e.
g. and, the etc.), In addition, appearances of words that share the same stem in the vocabulary (e. g.
goes vs going) are merged into a single term.
Next, one can consider using the normalized count of the vocabulary words in each document to build
representation vectors. A popular numerical statistic to capture the importance of a word to a
document in a corpus is the Term Frequency-Inverse Document Frequency (TFxIDF) metric. This
measure takes into account count of the words in the document, as normalized by a certain function of
the frequency of the individual words in the whole corpus. For example, if a corpus is about computer
accessories then words such as “computer” “software” “purchase” will be present in almost every
document and their frequency is not a distinguishing feature for any document in the corpus. The
discriminating words will most likely be those that are specialized terms describing different types of
accessories and hence will occur in fewer documents. Thus, a human reading a particular document will
usually ignore the contextually dominant words such as “computer”, “software” etc. and give more
importance to specific words. This is like when going into a very bright room or looking at a bright
object, the human perception system usually applies a saturating function (such as a logarithm or        
square-root) to the actual input values before passing it on to the neurons. This makes sure that a
contextually dominant signal does not overwhelm the decision-making processes in the brain. The
TFxIDF functions draw their inspiration from such neuronal systems.
b) Perform the following on the documents of balanced data of 8 classes, to convert them into
numerical feature vectors. First tokenize each document into words. Then, excluding the stop words,
punctuations, and using stemmed version of words, create a TFxIDF vector representations. TFxIDF
vector representation of a document is defined as follows:
������(�, �) = ��(�, �) ∗ ���(�)
where ��(�, �) represents the frequency of term � in document d, and inverse document frequency is
defined as:
���(�) = log [ � / ��(�)] + 1
where � is the total number of documents, and ��(�) is the document frequency; the document
frequency is the number of documents that contain the term �.
Through part i, use two settings for minimum document frequency of vocabulary terms, namely
min_df=2 and min_df=5. Report the final number of terms you extracted.
As for a list of stop words, you can refer to the list provided in scikit-learn package. You can run the
following commands to take a look at this list.
c) In order to quantify how significant a word is to a class, we can define a measure called TFxICF. It is
the same as TFxIDF, except that a class sits in place of a document; that is for a term t and a class c, the
measure is computed as
������(�, �) = ��(�, �) ∗ ���(�)
where ��(�, �) represents the term frequency in a class � , and inverse class frequency is defined as:
���(�) = log [ �<=>??@? / ��(�)] + 1
and    �<=>??@? is the total number of classes, and ��(�) is the class frequency which is the number of
classes within which there is at least a document containing the term �.
Find the 10 most significant terms in each of the following classes with respect to TFxICF measure. Note
that in this part of your assignment, �<=>??@? is 20. (You can use the unbalanced dataset of all 20 classes
for this part)
comp.sys.ibm.pc.hardware, comp.sys.mac.hardware, misc.forsale, soc.religion.christian.
Feature Selection:
After these operations, the dimensionality of the representation vectors (TFxIDF vectors) ranges in the
order of thousands. However, the document-term tfidf matrix is sparse and low-rank. Besides, learning
algorithms may perform poorly in high-dimensional data, which is sometimes referred to as “The Curse
of Dimensionality”. As a remedy, one can select a subset of the original features, which are more
relevant with respect to certain performance measure, or transform the features into a lower
dimensional space.
In this project, we use Latent Semantic Indexing (LSI), a dimensionality reduction transform method,
which minimizes mean squared residual between the original data and reconstruction from its lowdimensional approximation. Recall that our data is the term-document tfidf matrix, whose rows
correspond to TFxIDF representation of the documents.
The LSI representation is obtained by computing left and right singular vectors corresponding to the
largest values of the term-document tfidf matrix. LSI is similar to Principal Component Analysis (PCA),
and see the lecture notes for their relationships.
Eigenvectors corresponding to the dominant eigenvalues obtained by LSI correspond to most prevailing
combinations of terms in the corpus, which can be thought of as “topics” or “semantic concepts”. Thus,
the new low dimensional representation is the magnitudes of the projections of the document vectors
onto these latent “topics”.
Let � denote the � × � term-document matrix with rank � where each of the � columns represents a
document vector of dimension �. The singular value decomposition results in
� = ���F,
Where � is an � × � diagonal matrix of singular values of �, � is a � × � matrix of left singular column
vectors, and � is a � × � matrix of right singular vectors. Dropping all but � largest singular values and
corresponding singular vectors gives the following truncated approximation
�H = �H�H�H
F.
The approximation is the best rank k approximation of D in the sense of minimizing the sum of squared
differences between the entries of � and �H.
The � × � matrix �H can now be used as a projection matrix to map each � × 1 document column vector
� into a �-dimensional representation
�H = �H
F�.
d) Apply LSI to the TFxIDF matrix corresponding to the 8 classes. and pick k=50; so each document is
mapped to a 50-dimensional vector. Alternatively, reduce dimensionality through Non-Negative Matrix
Factorization (NMF) and compare the results of the parts e-i using both methods.
Learning Algorithms
For the following parts (e-h) of the project, your task would be to classify the documents into two
categories ‘‘Computer Technology’ vs ‘Recreational Activity’. Refer to Table 1 to find 4 subclasses
comprising each of the two classes. In other words, you need to combine documents of sub-classes of
each class to form the set of documents for each class.
Classification accuracy can be evaluated using different measures called precision, recall, F-score, etc.
Precision is the proportion of items placed in the category that are really in the category, and recall is
the proportion of items in the category that are actually placed in the category.        
Depending on application, the true positive rate (TPR) and the false positive rate (FPR) have different
levels of significance. In order to characterize the trade-off between the two quantities we plot the
receiver operating characteristic (ROC) curve. For binary classification, the curve is created by plotting
the true positive rate against the false positive rate at various threshold settings on the probabilities
assigned to each class (let us assume probability � for class 0 and 1 − � for class 1). In particular, a
threshold � is applied to value of � to select between the two classes. The value of threshold � is swept
from 0 to 1 to produce a pair of precision and recall for each value of �.
Linear Support Vector Machines have been proved efficient when dealing with sparse high dimensional
datasets, including textual data. They have been shown to have good generalization accuracy, while
having low computational complexity.
Linear Support Vector Machines aim to learn a vector of feature weights, �, and an intercept, �, given
the training data set. Once the weights are learned, the label of a data point is determined by
thresholding �F. � + � with 0, i.e. ����(�F. � + �).         Alternatively, one produce probabilities that the
data point belongs to either class, by applying a logistic function instead of hard thresholding, i.e.
calculating �(�F. � + �).
The learning process involves solving the following optimization problem:
min
1
2 ∥ � ∥W
W + � �Z
[
Z\]
s.t. y_ wa. x_ + b ≥ 1 − ξ_, and ξ_ ≥ 0, for all i ∈ {1, … , n}.
Minimizing     the     sum     of     the     slack    variables     corresponds     to    minimizing     the    loss     function     on     the     training    
data.    On     the     other     hand,    minimizing     the     first     term,     which     is    basically    a regularization,     corresponds     to    
maximizing    the    margin    between    the    two    classes.    Note    that    in    the    objective    function,    each    slack    variable    
represents     the     amount     of     error     that     the     classifier     can     tolerate     for     a     given     data     sample. The     tradeoff    
parameter    � controls    relative    importance    of    the    two    components    of    the    objective    function.    For    instance,    
when � ≫ 1,     misclassification     of     individual     points     is     highly     penalized,     which     is     called     “Hard     Margin    
SVM”.     In     contrast,     a     “Soft     Margin     SVM”,     which     is     the     case     when � ≪ 1,     is     very     lenient     towards    
misclassification    of    a    few    individual    points    as    long    as    most    data    points    are    well    separated.
e) Use hard margin SVM classifier (SVC) by setting � to a high value, e.g. 1000, to separate the
documents into ‘Computer Technology’ vs ‘Recreational Activity’ groups. In your submission, plot the
ROC curve, report the confusion matrix and calculate the accuracy, recall and precision of your
classifier. Repeat the same procedure for soft margin SVC (set � to 0.001)
f) Using a 5-fold cross-validation, find the best value of the parameter � in the range 10H − 3 ≤ � ≤
3, � ∈ �}. Report the confusion matrix and calculate the accuracy, recall and precision of the classifier.
g) Next, we use naïve Bayes algorithm for the same classification task. The algorithm estimates the
maximum likelihood probability of a class given a document with feature set x, using Bayes rule, based
upon the assumption that given the class, the features are statistically independent.
Train a multinomial naïve Bayes classifier and plot the ROC curve for different values of the threshold on
class probabilities. You should report your ROC curve along with that of the other algorithms. Again,
Report the confusion matrix and calculate the accuracy, recall and precision of your classifier.
h) Repeat the same task with the logistic regression classifier, and plot the ROC curve for different
values of the threshold on class probabilities. You should report your ROC curve along with that of the
other algorithms. Provide the same evaluation measures on this classifier.
i) Now, repeat part (h) by adding a regularization term to the optimization objective. Try both �] and �W
norm regularizations and sweep through different regularization coefficients, ranging from very small
ones to large ones. How does the regularization parameter affect the test error? How are the
coefficients of the fitted hyperplane affected? Why might one be interested in each type of
regularization?
Multiclass Classification:
So far, we have been dealing with classifying the data points into two classes. In this part, we explore
multiclass classification techniques through different algorithms.
Some classifiers perform the multiclass classification inherently. As such, Naïve Bayes algorithm finds the
class with maximum likelihood given the data, regardless of the number of classes. In fact, the
probability of each class label is computed in the usual way, then the class with the highest probability is
picked; that is
� = arg min
<∈s �(�|�).
where � denotes a class to be chosen, and � denotes the optimal class.
For SVM, however, one needs to extend the binary classification techniques when there are multiple
classes. A natural way to do so is to perform a one versus one classification on all |C|
2 pairs of classes,
and given a document the class is assigned with the majority vote. In case there is more than one class
with the highest vote, the class with the highest total classification confidence levels in the binary
classifiers is picked.
An alternative strategy would be to fit one classifier per class, which reduces the number of classifiers to
be learnt to |�|. For each classifier, the class is fitted against all the other classes. Note that in this case,
the unbalanced number of documents in each class should be handled. By learning a single classifier for
each class, one can get insights on the interpretation of the classes based on the features.
i) In this part, we aim to learn classifiers on the documents belonging to the classes mentioned in part b;
namely
comp.sys.ibm.pc.hardware, comp.sys.mac.hardware, misc.forsale,
soc.religion.christian.
Perform Naïve Bayes classification and multiclass SVM classification (with both One VS One and One VS
the rest methods described above) and report the confusion matrix and calculate the accuracy, recall
and precision of your classifiers.